It's actually even simpler than that. You don't have to make any assumptions about how quickly the energy is deposited, you can just work out the energy contained in an MFC, so 20 shots * 3.3kJ * 2.5 = 165kJ.
In New Vegas hardcore mode, they have a mass of 0.1 pounds (so 0.05kg). 165kJ per 0.05kg gives an energy density of 3.3 MJ/kg. This is actually similar to that of gunpowder:
https://en.wikipedia.org/wiki/Energy_density
However, even our best lasers today only have an efficiency of about 50%. Half the energy goes into the laser beam ,the rest is wasted as heat, so to get that amount of energy in the laser beams, we're probably talking an energy density of maybe 6 or 7 MJ/kg for our MFCs. To put that in perspective, the energy density of ordinary gasoline is about 44MJ/kg.
Especially for aircraft, weight is key. A fossil-fuel powered aircraft is going to have maybe 4 times the endurance of a similar one powered using MF cells, even if you account for the fact that fossil fuel engines can reach about 50% efficiency, and electric motors can surpass 90%. It will probably be far more worthwhile to refine some sort of biodiesel for military applications. For civilian stuff like cars, MF cells will give you reduced range, but weight isn't nearly so much of a consideration, so they would probably be ideal for that.